PyGLtools

ref：https://github.com/billgreenwald/pgltools

ref2：生物信息网 -- 生命科学软件、网络服务、数据库

所有的工具

用法：

python /home/shen/.local/lib/python2.7/site-packages/PyGLtools/ xxx.py

formatTripSparse.py

python /home/shen/.local/lib/python2.7/site-packages/PyGLtools/formatTripSparse.py -ts WT-2_100000.matrix -an WT-2_100000_abs.bed > output.pgl

browser.py

python /home/shen/.local/lib/python2.7/site-packages/PyGLtools/browser.py -a output.pgl > output.bed

findLoops.py

python /home/shen/.local/lib/python2.7/site-packages/PyGLtools/findLoops.py -a output.pgl > output.loop.bed

juicebox.py

python /home/shen/.local/lib/python2.7/site-packages/PyGLtools/juicebox.py  -a output.pgl > output.chiapetTool.hic