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conda 安装r-units(ERROR: configura

conda 安装r-units(ERROR: configura

作者: 何物昂 | 来源:发表于2021-05-20 13:20 被阅读0次

    一开始,我是想安装ggVennDiagram这个包的,但是因为unitssf这两个包安装失败,导致ggVennDiagram不能安装成功。

    注:我是使用conda虚拟环境中的R

    然后我就单独安装了units这个包,提示

    configure: error: in `/tmp/RtmpxsCHZa/R.INSTALL18ae05e2eac89/units':
    configure: error: 
    --------------------------------------------------------------------------------
      Configuration failed because libudunits2.so was not found. Try installing:
        * deb: libudunits2-dev (Debian, Ubuntu, ...)
        * rpm: udunits2-devel (Fedora, EPEL, ...)
        * brew: udunits (OSX)
      If udunits2 is already installed in a non-standard location, use:
        --configure-args='--with-udunits2-lib=/usr/local/lib'
      if the library was not found, and/or:
        --configure-args='--with-udunits2-include=/usr/include/udunits2'
      if the header was not found, replacing paths with appropriate values.
      You can alternatively set UDUNITS2_INCLUDE and UDUNITS2_LIBS manually.
    --------------------------------------------------------------------------------
    
    See `config.log' for more details
    ERROR: configuration failed for package ‘units’
    * removing ‘/home/user/software/anaconda/envs/R/lib/R/library/units’
    

    根据提示,我通过命令安装

    yum install udunits2-devel
    

    同时安装命令换成

    install.packages("units",
       configure.args = c("--with-udunits2-include=/usr/include/udunits2 --with-udunits2-lib=/usr/lib64"))
    

    注:这里用/usr/lib64而不是提示用的/usr/local/lib,是因为libudunits2.so是在/usr/lib64里。

    但是并未安装成功,还是有上面的错误输出。

    由于我是在conda 的虚拟环境中使用,那么把所需要的依赖软件也在虚拟环境中安装下吧,

    ### linux shell
    $ conda activate ENV_NAME
    $ conda install -c conda-forge udunits2
    

    在R里

    > config <- c(units="--with-udunits2-lib=/path/to/home/directory/anaconda/envs/ENV/lib --with-udunits2-include=/path/to/home/directory/anaconda/envs/ENV/include")
    > install.packages("units", configure.args = config )
    

    注: /path/to/home/directory/anaconda/envs/ENV/lib 和 /path/to/home/directory/anaconda/envs/ENV/include 是虚拟环境ENV地址下的两个目录。虚拟环境地址可以通过conda env list知道

    然后呢units安装成功。用conda把 sf也安装了

    conda install -c conda-forge r-sf
    

    最后再安装一下ggVennDiagram成功

    install.packages("ggVennDiagram")
    

    参考

    Troubles installing units (Ubuntu 18.04.1) · Issue #223 · r-quantities/units (github.com)

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