> sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
Matrix products: default
locale:
[1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
[2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
[3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_People's Republic of China.936
attached base packages:
[1] parallel stats4 stats graphics grDevices utils
[7] datasets methods base
other attached packages:
[1] AnnotationDbi_1.38.2 Biobase_2.36.2 AnnotationHub_2.8.3
[4] BiocInstaller_1.26.1 IRanges_2.10.5 S4Vectors_0.14.7
[7] BiocGenerics_0.22.1 edgeR_3.18.1 limma_3.32.10
[10] reshape2_1.4.2
loaded via a namespace (and not attached):
[1] Rcpp_0.12.13 compiler_3.4.2
[3] plyr_1.8.4 bitops_1.0-6
[5] tools_3.4.2 digest_0.6.12
[7] bit_1.1-12 RSQLite_2.0
[9] memoise_1.1.0 tibble_1.3.4
[11] lattice_0.20-35 pkgconfig_2.0.1
[13] rlang_0.1.4 shiny_1.0.5
[15] DBI_0.7 curl_3.0
[17] yaml_2.1.14 stringr_1.2.0
[19] httr_1.3.1 locfit_1.5-9.1
[21] bit64_0.9-7 grid_3.4.2
[23] R6_2.2.2 blob_1.1.0
[25] magrittr_1.5 htmltools_0.3.6
[27] mime_0.5 interactiveDisplayBase_1.14.0
[29] xtable_1.8-2 httpuv_1.3.5
[31] stringi_1.1.5 RCurl_1.95-4.8
> library(clusterProfiler)
载入需要的程辑包：DOSE
Error: package or namespace load failed for ‘DOSE’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
不存在叫‘DO.db’这个名字的程辑包
Error: 无法载入程辑包‘DOSE’
> source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help
A newer version of Bioconductor is available for this version of R,
?BiocUpgrade for help
> biocLite("DO.db")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.2
(2017-09-28).
Installing package(s) ‘DO.db’
installing the source package ‘DO.db’
trying URL 'https://bioconductor.org/packages/3.5/data/annotation/src/contrib/DO.db_2.9.tar.gz'
Content type 'application/x-gzip' length 1769978 bytes (1.7 MB)
downloaded 1.7 MB
'C:\Program' 不是内部或外部命令，也不是可运行的程序
或批处理文件。
The downloaded source packages are in
‘C:\Users\admin\AppData\Local\Temp\Rtmpec1Goe\downloaded_packages’
Old packages: 'openssl'
Update all/some/none? [a/s/n]:
a
There is a binary version available but the source version is later:
binary source needs_compilation
openssl 0.9.8 0.9.9 TRUE
Do you want to install from sources the package which needs compilation?
y/n: y
installing the source package ‘openssl’
trying URL 'https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/openssl_0.9.9.tar.gz'
Content type 'application/octet-stream' length 1112927 bytes (1.1 MB)
downloaded 1.1 MB
'C:\Program' 不是内部或外部命令，也不是可运行的程序
或批处理文件。
The downloaded source packages are in
‘C:\Users\admin\AppData\Local\Temp\Rtmpec1Goe\downloaded_packages’
Warning messages:
1: running command '"C:/Program Files/R/R-3.4.2/bin/x64/R" CMD INSTALL -l "C:\Program Files\R\R-3.4.2\library" C:\Users\admin\AppData\Local\Temp\Rtmpec1Goe/downloaded_packages/DO.db_2.9.tar.gz' had status 1
2: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘DO.db’ had non-zero exit status
3: running command '"C:/Program Files/R/R-3.4.2/bin/x64/R" CMD INSTALL -l "C:\Program Files\R\R-3.4.2\library" C:\Users\admin\AppData\Local\Temp\Rtmpec1Goe/downloaded_packages/openssl_0.9.9.tar.gz' had status 1
4: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘openssl’ had non-zero exit status
> install.packages("C:/Users/admin/AppData/Local/Temp/Rtmpec1Goe/downloaded_packages/DO.db_2.9.tar.gz", repos = NULL, type = "source")
'C:\Program' 不是内部或外部命令，也不是可运行的程序
或批处理文件。
Warning in install.packages :
running command '"C:/Program Files/R/R-3.4.2/bin/x64/R" CMD INSTALL -l "C:\Program Files\R\R-3.4.2\library" "C:/Users/admin/AppData/Local/Temp/Rtmpec1Goe/downloaded_packages/DO.db_2.9.tar.gz"' had status 1
Warning in install.packages :
installation of package ‘C:/Users/admin/AppData/Local/Temp/Rtmpec1Goe/downloaded_packages/DO.db_2.9.tar.gz’ had non-zero exit status
网友评论