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[TOC]

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安装环境

Ubuntu18.10
quast-5.0.2

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安装

./setup.py install_full

ERROR! setuptools is not installed or outdated!

You can install or update setuptools using
pip install --upgrade setuptools (if you have pip)
or
sudo apt-get install python-setuptools (on Ubuntu)

You may also use old-style installation scripts: ./install.sh or ./install_full.sh

In case you have troubles running QUAST, you can write to quast.support@cab.spbu.ru
or report an issue on our GitHub repository https://github.com/ablab/quast/issues
Please provide us with quast.log file from the output directory.

安装时出现这个问题

pip3 install --upgrade setuptools

安装插件之后，还是这个问题。
我觉得应该是默认用了python2的pip，而不是python3的pip3，所以判定没安装。
所以使用./install_full.sh这个老版本安装方式。
我改了ubuntu默认的python版本，现在输入python --version显示版本是3.6.7了。

sudo apt-get install zlib1g-dev
sudo apt-get install -y pkg-config libfreetype6-dev libpng-dev python-matplotlib
sudo ./setup.py install_full

安装之后似乎自动test有错误，可能是python版本问题，但是运行程序没问题。

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试用

手册：
http://quast.bioinf.spbau.ru/manual.html#sec2