bioperl安装流程:
-
bioperl 安装(cpan)
- perl -MCPAN -e shell 一路回车,安装完成后q退出
source ~/.bashrc
>cpan
cpan>install Module::Build
cpan>o conf prefer_installer MB
cpan>o conf commit
cpan>q
- 下载bioperl(wget https://github.com/bioperl/bioperl-live/archive/master.zip)并解压:unzip master.zip
- 进入解压后的目录安装
perl Build.PL --install_base=~/perl5/Bioperl/ 指定安装目录,可自行修改
./Build test
./Build install
中间一直敲回车即可,若无报错,则安装完成
-
blastxml安装
- 下载blastxml(wget http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/Bio-SearchIO-blastxml-1.70.tar.gz)并解压
- 进入解压后的目录安装
perl Makefile.PL --install_base ~/perl/lib/perl/Bio/SearchIO/
make
make install
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