问题来源

今天安装Y叔的yyplot包的时候出现这样的报错

> install.packages("/Users/xieqiqi/Downloads/yyplot-master/",repos = NULL,type = "source")
ERROR: dependencies ‘dlstats’, ‘gglayer’, ‘meme’, ‘RISmed’, ‘rsvg’, ‘scholar’ are not available for package ‘yyplot’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/yyplot’
Warning in install.packages :
  installation of package ‘/Users/xieqiqi/Downloads/yyplot-master/’ had non-zero exit status

错误的根源应该是没有这些依赖包，于是我把缺少的依赖包安装一遍

install.packages("dlstats")
install.packages("meme")
install.packages("RISmed")
install.packages("rsvg")
install.packages("scholar")
install.packages("/Users/xieqiqi/Downloads/gglayer-master/",repos = NULL,type = "source")

这时候新的问题就出现了，安装gglayer的时候又出现了以下的错误

Error in get(x, envir = ns, inherits = FALSE) : 
  找不到对象'setup_data_continuous_color'
错误: unable to load R code in package ‘gglayer’
停止执行
ERROR: lazy loading failed for package ‘gglayer’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gglayer’
Warning in install.packages :
  installation of package ‘/Users/xieqiqi/Downloads/gglayer-master/’ had non-zero exit status

解决思路

把错误关键词setup_data_continuous_color往谷歌里贴一下，会发现直接定位到了github上gglayer包里面的https://github.com/GuangchuangYu/gglayer/issues/1，其实y叔已经解答过这个问题

安装ggtree

> install.packages("/Users/xieqiqi/Downloads/ggtree-master/",repos = NULL,type = "source")
* installing *source* package ‘ggtree’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggtree)
> install.packages("/Users/xieqiqi/Downloads/gglayer-master/",repos = NULL,type = "source")
* installing *source* package ‘gglayer’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
Registered S3 method overwritten by 'treeio':
  method     from
  root.phylo ape 
** testing if installed package keeps a record of temporary installation path
* DONE (gglayer)

不幸的事情又发生了，继续安装yyplot的时候又出现以下报错

Error : .onLoad failed in loadNamespace() for 'sysfonts', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: 无法载入共享目标对象‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/sysfonts/libs/sysfonts.so’：:
  dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/sysfonts/libs/sysfonts.so, 6): Library not loaded: /opt/X11/lib/libfreetype.6.dylib
  Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/sysfonts/libs/sysfonts.so
  Reason: image not found
错误: unable to load R code in package ‘yyplot’
停止执行
ERROR: lazy loading failed for package ‘yyplot’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/yyplot’
错误: Failed to install 'yyplot' from GitHub:
  (由警告转换成)installation of package ‘/var/folders/l2/z_43t_mx3s30hlr5175g782w0000gn/T//RtmpPD1C3Z/fileedc76d280378/yyplot_0.0.8.tar.gz’ had non-zero exit status

继续解决问题，同样找到这样的答案

咱们安装xquartz，下载地址https://www.xquartz.org，安装完这个程序之后再安装yyplot

> install.packages("/Users/xieqiqi/Downloads/yyplot-master/",repos = NULL,type = "source")
* installing *source* package ‘yyplot’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (yyplot)

好了，搞定，我是小琪，一枚有点小理想的小医生，咱们明天见！

作者：解琪琪
链接：https://www.jianshu.com/u/bcb81276c29d
来源：简书
简书著作权归作者所有，任何形式的转载都请联系作者获得授权并注明出处。