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下载并检查cisTarget databases备选方案

下载并检查cisTarget databases备选方案

作者: Seurat_Satija | 来源:发表于2021-04-14 11:08 被阅读0次

    备选方案:直接下载数据库

    # Specify database name:
    feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc8nr/gene_based/hg19-500bp-upstream-7species.mc8nr.feather'
    
    feather_database="${feather_database_url##*/}"
    
    # Download database directly (with wget or curl):
    wget "${feather_database_url}"
    # curl -O "${feather_database_url}"
    
    # Download sha256sum.txt (with wget or curl):
    wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt
    # curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt
    
    # Check if sha256 checksum matches for the downloaded database:
    awk -v feather_database=${feather_database} '$2 == feather_database' sha256sum.txt | sha256sum -c -
    
    # If you downloaded mulitple databases, you can check them all at onces with:
    sha256sum -c sha256sum.txt
    

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