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fastq-dump报错

fastq-dump报错

作者: JeremyL | 来源:发表于2018-05-31 01:25 被阅读36次

    fastq-dump SRR1042xxx.sra
    2018-05-30T16:07:44 fastq-dump.2.9.0 err: file invalid while opening directory within file system module - failed SRR1042xxx.sra

    =============================================================
    An error occurred during processing.
    A report was generated into the file '/home/xxx/ncbi_error_report.xml'.
    If the problem persists, you may consider sending the file
    to 'sra@ncbi.nlm.nih.gov' for assistance.
    =============================================================

    解决:问题很简单,就是sra文件没有下载完整,重新下载;遇到这种问题,也是佩服自己运气了。
    在文件下载一半的时候,就使用fastq-dump转换格式,报同样的错误。

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