fastq-dump报错
有时在使用fastq-dump转换sra文件时,可能遇到下面的错误
fastq-dump --split-3 file.sra
An error occurred during processing.
A report was generated into the file '/root/ncbi_error_report.xml'.
If the problem persists, you may consider sending the file
to 'sra@ncbi.nlm.nih.gov' for assistance.
这是因为你的磁盘不够了,文件写不下去了,这时就需要清理文件了,或者在输出fastq文件时进行压缩
fastq-dump --split-3 --gzip file.sra
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