bamtobed

ref: bamtobed — bedtools 2.27.0 documentation

安装：BEDtools

使用：

bamToBed -i xxx.bam > xxx.bed

-bedpe Write BAM alignments in BEDPE format

默认是输出bed格式

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By default, each alignment in the BAM file is converted to a 6 column BED.

bed文件：

bed

bedpe格式：

bedpe